PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa05g002660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 567aa MW: 63149.8 Da PI: 5.8303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5e-14 | 402 | 448 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YIk+Lq Csa05g002660.1 402 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 448 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.8E-50 | 48 | 239 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.96E-19 | 397 | 463 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.936 | 398 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.17E-15 | 401 | 451 | No hit | No description |
Pfam | PF00010 | 1.9E-11 | 402 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-19 | 402 | 464 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-17 | 404 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 567 aa Download sequence Send to blast |
MSMSDLGWDD EEKSMVSAVL GHLASDFLRA NSNSNQNLFL VMGADDSLNK KLSSLVDWPN 60 SENFSWNYAI FWQQTMSRSG QHVLGWGDRC CREPNEEEES KALRSYHFNY MGLDEETWQD 120 MRKRVLQKLH RVFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYASGKHV 180 WLSDAVNSES DYCFRSFMAK SSGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM 240 RRVTQPLMVT SNTSGGIHRL FGQDLNNSDH VAHAYPKKLD VRRNLDERFT PQSWDGYNNN 300 KGPTCGGYTT QREDVKVQEN LNLVLDNSNY KTQIELAASS IGASSNPSTN TQLEISDSCT 360 AKRPGSLLAA SGLGAGTVSV VDEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA 420 LRSVVPNISK MDKASLLGDA ISYIKELQEK VNIMEAERVR TESTVESTPE VDVQAVNEEV 480 VVRVISPLDS HPASRIIQAM RNSEVSVLES KLSLAEDTMF HTFVVKSNNV SDPLTKEKLI 540 AAVCPPETSS TQQPLPSSSS QVSVDF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 396 | 468 | 2 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 383 | 391 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa05g002660.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006418 | 0.0 | AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence. | |||
GenBank | AC006526 | 0.0 | AC006526.8 Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508006.1 | 0.0 | PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like | ||||
Swissprot | Q9ZPY8 | 0.0 | AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
TrEMBL | D7LEK3 | 0.0 | D7LEK3_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010508006.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46510.1 | 0.0 | ABA-inducible BHLH-type transcription factor |
Publications ? help Back to Top | |||
---|---|---|---|
|