PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 308aa    MW: 35427.7 Da    PI: 7.1299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13121171154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h ++Er+RR+++N  ++ Lr+l+P++   + ++ + a+i+  A++++k L
  Csa05g002350.1 121 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YIQRGDQASIVGGAIDFVKIL 171
                     79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-15112184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10119176No hitNo description
PROSITE profilePS5088814.843120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13121185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLQQSEEPSS FLSIKEPNFL ALLSLQTLEK PNWELENYLP HEVPEFHSPI HSETNNHYYH  60
NSYLEGVSEA ISGQELPFNP LQNTNPRRKR KNNNMVTSMT RERRKRRRTK PTKNIEEMES  120
QRMTHIAVER NRRRQMNVHL NSLRSLIPSS YIQRGDQASI VGGAIDFVKI LEQHLQALEA  180
QKSTQQSTDS KEHNPEEENN NNNTLRDISS NKLPASKEEE EETNRLTKIE ATVIESHVNL  240
KVQCTRKQGQ LLRSIILLEK LGFTVLHLNI TSPTNTSVSY SFNLKMEDDC NLGSADEIKA  300
AIRQIFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188107KRKNNNMVTSMTRERRKRRR
2103107RKRRR
3103108RKRRRT
4103110RKRRRTKP
5121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507965.10.0PREDICTED: transcription factor bHLH70-like
SwissprotO810371e-168BH070_ARATH; Transcription factor bHLH70
TrEMBLR0FU140.0R0FU14_9BRAS; Uncharacterized protein
TrEMBLR0HQY40.0R0HQY4_9BRAS; Uncharacterized protein
STRINGXP_010507965.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-158bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]