PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g066410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 343aa    MW: 38255 Da    PI: 6.8418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g066410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.8e-33175231258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h
  Csa04g066410.1 175 EDGYRWRKYGQKAVKNSPFPRSYYRCTTTSCNVKKRVERSFRDPSTVVTTYEGQHTH 231
                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.2E-1141342IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.7E-33159234IPR003657WRKY domain
SuperFamilySSF1182901.96E-28166232IPR003657WRKY domain
PROSITE profilePS5081130.802169234IPR003657WRKY domain
SMARTSM007741.1E-38174233IPR003657WRKY domain
PfamPF031069.5E-26175231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEFTDFSKTS YYYPSSQGVW DFGDLAAAER NNSLGFMELL GSQPQPHHYD FATTTVSPHS  60
LLSTKLSSPV STILQAAAPP PSDKASSKVE SFCSDQFSIN PPATPNSSSI SSASSEAVNE  120
EKPKREDNQE EEEEEEEKSH HHPKKQLKAK KNNNQKRQRE ARVAFMTKSE VDHLEDGYRW  180
RKYGQKAVKN SPFPRSYYRC TTTSCNVKKR VERSFRDPST VVTTYEGQHT HISPRTSRPI  240
STGAGFYGSS GAASNLGNGG CFGFPLETST LISPQFQQLV HYHQQQQQQE LLSCFGGVGE  300
YLNTHANEFG DDDDRVKRSR GLVNKDNGLL QDVVPSHMLK EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27164234777Probable WRKY transcription factor 4
2lex_A2e-27164234777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g066410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179180.0AK117918.1 Arabidopsis thaliana At2g47260 mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL19-10-C13.
GenBankAY0526470.0AY052647.1 Arabidopsis thaliana WRKY transcription factor 23 (WRKY23) mRNA, complete cds.
GenBankBT0062380.0BT006238.1 Arabidopsis thaliana At2g47260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506761.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-163WRK23_ARATH; WRKY transcription factor 23
TrEMBLR0HQZ61e-178R0HQZ6_9BRAS; Uncharacterized protein
STRINGXP_010506761.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-110WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]