PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g065940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 35353.7 Da PI: 6.6125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 3.9e-13 | 121 | 171 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+l+P++ + ++ + a+i+ A++++k L Csa04g065940.1 121 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YIQRGDQASIVGGAIDFVKIL 171 79****************************...9***************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-15 | 112 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-10 | 119 | 176 | No hit | No description |
PROSITE profile | PS50888 | 14.843 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-13 | 121 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-9 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MLQQSEEPSS FLSIKEPNFL ALLSLQTLEK PNWEVENYLP HEVPEFHSPI HSETNNHYYQ 60 NSYLEGVSEA ISGQELLFNP LQNTNPRRKR KNNNMVTSMT REKRKRRRTK PTKNIEEMES 120 QRMTHIAVER NRRRQMNVHL NSLRSLIPSS YIQRGDQASI VGGAIDFVKI LEQHLQALEA 180 QKTTQQSTDS KDEIPEEDNY SNSLRDISSN TLRASKEEEE EETRGLTKID ATVIESHVNL 240 KIQCTRKQGQ LLRSIILLEK LGFTVLHLNI TSPTNTSVSY SFNLKMDDDC NLGSADEIKA 300 AIRQIFD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 107 | KRKNNNMVTSMTREKRKRRR |
2 | 102 | 107 | KRKRRR |
3 | 103 | 107 | RKRRR |
4 | 103 | 108 | RKRRRT |
5 | 103 | 110 | RKRRRTKP |
6 | 121 | 132 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g065940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507775.2 | 0.0 | PREDICTED: transcription factor bHLH70-like | ||||
Swissprot | O81037 | 1e-166 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | R0FU14 | 0.0 | R0FU14_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0HQY4 | 0.0 | R0HQY4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010507775.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-158 | bHLH family protein |
Publications ? help Back to Top | |||
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