PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g065450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 34116.3 Da PI: 6.5242 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.7 | 4.1e-27 | 110 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe++gs++pr+YYrCt++ +C + k+v++s++dp+v e++Y g+H+++ Csa04g065450.1 110 EDGHCWRKYGQKEIHGSKNPRAYYRCTHRftqNCVAVKQVQKSDTDPSVYEVKYLGNHTCN 170 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-25 | 96 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.403 | 104 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-23 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 109 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-22 | 110 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MQKMMMEEKL VISELELGKD LANQLMSNLK HTSSSADSNK TLISEILRVY QNAIFMLSLN 60 EDKNTLKRRS PEIDDDKDSK TMLKKRKTSE KKTEKVKVFV ATGQDNGSIE DGHCWRKYGQ 120 KEIHGSKNPR AYYRCTHRFT QNCVAVKQVQ KSDTDPSVYE VKYLGNHTCN NATVTSPKAT 180 TTTMNFSVSM FEEGRNRVNV TEQSEDIKPK KSEEVMMTNL EDLENKKNIF RTFSFPNHEF 240 ENGQWKSNLF LGDLSPATSG SGITSEIVTA PASLENSETA DSYFSSLDNI IDQDWLWSAL 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-22 | 108 | 169 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 86 | KRRSPEIDDDKDSKTMLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321, ECO:0000269|PubMed:28576847}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g065450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506641.1 | 0.0 | PREDICTED: probable WRKY transcription factor 46 | ||||
Swissprot | Q9SKD9 | 1e-166 | WRK46_ARATH; Probable WRKY transcription factor 46 | ||||
TrEMBL | D7LDZ6 | 1e-170 | D7LDZ6_ARALL; Uncharacterized protein | ||||
STRING | XP_010506641.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-149 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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