PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g063630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 354aa    MW: 37530.4 Da    PI: 10.1774
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g063630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.4e-3769151283
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  + 
  Csa04g063630.1  69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTT 151
                     57999***********************************************************8888844421111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3074151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MATYHQKQEE VGVKDQTLSR AVVINGVRNV ETSRPFQVNA TVSLEPKPEP TMQMQVPLSL  60
APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE  120
NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDLGD NPMKKKRKRP SNSEYIDIND  180
AVSVSSGLAP ITTTTMIQQP PAAPSTTVAQ QQHMYPMWAI PSNAVIPTVG AFFLVPQIAG  240
PANQPQLLAF PAAAAAPPSS YVAAVQQASS LARPPPSHQV YPGSGVSDVS GSNSLRTTSA  300
MAPSSSSGIK TGGSSSSVTT TTTHTLRDFP LEIYEKQELH QFMSTTTTRS SNH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g063630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506536.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646471e-176TCP9_ARATH; Transcription factor TCP9
TrEMBLR0HGG10.0R0HGG1_9BRAS; Uncharacterized protein
STRINGXP_010506536.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-145TCP family protein