PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g063090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | YABBY | ||||||||
Protein Properties | Length: 301aa MW: 34104 Da PI: 8.9701 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 274.3 | 1.4e-84 | 90 | 261 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveeenlksnveke 89 d+ s s+++CyvqCnfC+tilavsvP+tslfk+vtvrCG+Ct+llsvn++ +l+a+++l+ +l ++ ++eel+++ +n++++++++ Csa04g063090.1 90 DHLSPSDHLCYVQCNFCDTILAVSVPYTSLFKTVTVRCGCCTTLLSVNMR---LVLPASNQLQLQLGPHsyfnsqnIMEELRDAPSNMNMMMMNQ 181 78899*****************************************8876...57999**********999***99******************* PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++++++s+ ++ ++++e+p++ppv+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Csa04g063090.1 182 HSNMNDIPSF-MDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 261 *********6.5*******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-70 | 94 | 261 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.17E-7 | 207 | 254 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 209 | 255 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
LLSPFTFSLS LYLPLWYIIH SNPTIKKIRS WWGFLFSPYQ ESSDQSNTHQ SIKSPNTPKK 60 RSASNFFLFL TKKMSMSSMS SPSSAVFSPD HLSPSDHLCY VQCNFCDTIL AVSVPYTSLF 120 KTVTVRCGCC TTLLSVNMRL VLPASNQLQL QLGPHSYFNS QNIMEELRDA PSNMNMMMMN 180 QHSNMNDIPS FMDLHQQHEI PKAPPVNRPP EKRQRVPSAY NRFIKEEIQR IKAGNPDISH 240 REAFSAAAKN WAHFPHIHFG LVPDNQPVKK TNMPQQEGED NMVMKDGFYA PAANVGVTPY 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g063090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF087015 | 0.0 | AF087015.1 Arabidopsis thaliana abnormal floral organs protein (AFO) mRNA, complete cds. | |||
GenBank | AF136538 | 0.0 | AF136538.1 Arabidopsis thaliana YABBY1 (YABBY1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506457.1 | 1e-170 | PREDICTED: axial regulator YABBY 1 | ||||
Refseq | XP_010518132.1 | 1e-170 | PREDICTED: axial regulator YABBY 1 | ||||
Swissprot | O22152 | 1e-143 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A1J3I4U6 | 1e-167 | A0A1J3I4U6_NOCCA; Axial regulator YABBY 1 (Fragment) | ||||
STRING | XP_010506457.1 | 1e-170 | (Camelina sativa) | ||||
STRING | XP_010518132.1 | 1e-170 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-140 | YABBY family protein |