PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g063020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 335aa    MW: 38072.8 Da    PI: 5.611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g063020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC  C ksF +   L  H+r+H
  Csa04g063020.1  4 YKCRFCFKSFINGRALGGHMRSH 26
                    9*********************9 PP
2zf-C2H2140.00015207229123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk F++   L  H  +H
  Csa04g063020.1 207 FKCETCGKEFKSYQALGGHRASH 229
                     89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.81E-9326No hitNo description
PfamPF139128.0E-4327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014434IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.81E-9202229No hitNo description
PfamPF139126.7E-11206231IPR007087Zinc finger, C2H2
SMARTSM003550.024207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PfamPF139124.9E-10258281IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746259281IPR007087Zinc finger, C2H2
SMARTSM003550.48259281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGRALG GHMRSHMLTL SEKPELYELT GEQQEEERPS QLSSHDDDDT  60
ESDDASSSSD EFDHLKRNRS THDDGCEFDF AEDDDDDVES ETESSRINPT RRRSKRTRKL  120
GSFDFDDFKK LETSQPGELV VTEPDHHSSA SDTTTEEDLA FCLIMLSRDK WKQHKKKKTT  180
KTRVEEEDEC EDYKSSKNKG GGGRGRFKCE TCGKEFKSYQ ALGGHRASHK KNKACTAKTE  240
QVKTEYVHGG VTVTEKRVHE CPICFRVFIS GQALGGHKRS HGSSIGAGRL NVNQIVRIHK  300
DEQEEEVSMK QGTIDLNLPA PNEEDETSLV FDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g063020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506448.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-138ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLR0FXI71e-148R0FXI7_9BRAS; Uncharacterized protein
STRINGXP_010506448.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-123C2H2-like zinc finger protein