PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g057350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 722aa MW: 78453.4 Da PI: 6.5589

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g057350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Csa04g057350.1 305 PCPDFRK-GACRRGDMCEYAHG 325 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	8.24E-17	39	182	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-17	41	184	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.37E-14	47	181	No hit	No description
Pfam	PF12796	1.2E-10	84	157	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.361	89	192	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0089	89	119	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.3E-5	90	105	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	124	159	IPR002110	Ankyrin repeat
SMART	SM00248	0.0039	124	156	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.3E-5	143	157	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	300	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-5	305	325	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	305	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	305	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	333	363	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.409	335	359	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	67	335	358	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MCCGSDRLNQ ILSSTSSSPV SFEDNNLVTN LVMNHLRVET EDTFASLLEL AANNDVEGVR 60 LSIERDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSLDVIKLIV SLTDANVNRA 120 CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM 180 LQELLSADGS STAERNLRVV TNVPNRGSSP SHSPTGENGG SGSGSPLGSP FKLKSTEFKK 240 EYPVDPSLPD IKNSIYATDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTGCGRR VCFFAHTPEE 360 LRPLYASTGS AVPSPRSNAD YAAALSLLPG SPSGVSVMSP LSPSSAGNGM SHSNMAWPQP 420 NVPALHLPGS NLQSSRLRSS LNARDIPTDE FNMLADYDQQ QLLNEYSNSL SRSGRMKSMP 480 PSNLEDLFSA EGSSSPRFTD SALASAVFSP THKSAVFNQF QQQQQQQQQQ QSMLSPINTS 540 FSSPKSVDHS LFSGGGRMSP RNVVEPISPM SSRVSMLAQC VKQQQQQQQQ QQQQHQYRSL 600 SSRELRTNSS PIVGSPVNNN NNTWSSSKWG SSNGQPDWGM SSEALGKLRS SSSFDGDEPD 660 VSWVQSLVKE SPTDAKEKAA TSSSSGENVK QPNPMEPVMD HAGLEAWIEQ MQLDQLVAQQ 720 N*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MCCGSDRLNQ ILSSTSSSPV SFEDNNLVTN LVMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIERDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSLDVIKLIV SLTDANVNRA  120
CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNVPNRGSSP SHSPTGENGG SGSGSPLGSP FKLKSTEFKK  240
EYPVDPSLPD IKNSIYATDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTGCGRR VCFFAHTPEE  360
LRPLYASTGS AVPSPRSNAD YAAALSLLPG SPSGVSVMSP LSPSSAGNGM SHSNMAWPQP  420
NVPALHLPGS NLQSSRLRSS LNARDIPTDE FNMLADYDQQ QLLNEYSNSL SRSGRMKSMP  480
PSNLEDLFSA EGSSSPRFTD SALASAVFSP THKSAVFNQF QQQQQQQQQQ QSMLSPINTS  540
FSSPKSVDHS LFSGGGRMSP RNVVEPISPM SSRVSMLAQC VKQQQQQQQQ QQQQHQYRSL  600
SSRELRTNSS PIVGSPVNNN NNTWSSSKWG SSNGQPDWGM SSEALGKLRS SSSFDGDEPD  660
VSWVQSLVKE SPTDAKEKAA TSSSSGENVK QPNPMEPVMD HAGLEAWIEQ MQLDQLVAQQ  720
N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g057350.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY037232	0.0	AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	AY093957	0.0	AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505990.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	E4MVK8	0.0	E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBL	V4M994	0.0	V4M994_EUTSA; Uncharacterized protein
STRING	XP_010505990.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]