PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g056220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 273aa    MW: 30333.4 Da    PI: 8.6931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g056220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028207229223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H  + H
  Csa04g056220.1 207 VCPQCGAKFSSVTSLVEHVEKtH 229
                     6*****************99888 PP
2zf-C2H2201.8e-06244266223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L++Hi + H
  Csa04g056220.1 244 VCPKCSRGFRDPVDLVNHIERdH 266
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.103.1E-983134IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.75E-885133No hitNo description
PROSITE profilePS510398.2390139IPR000058Zinc finger, AN1-type
PfamPF014283.0E-893132IPR000058Zinc finger, AN1-type
SMARTSM001540.006893134IPR000058Zinc finger, AN1-type
PROSITE profilePS5015710.45206234IPR007087Zinc finger, C2H2
SMARTSM003550.01206229IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.43E-5207262No hitNo description
PROSITE patternPS000280208229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4210229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954243271IPR007087Zinc finger, C2H2
SMARTSM003557.9243266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTLEISDSYI LGPSWDLLYY MPTSLVFCLD HRSYIKHTCP KGDREDVTVV ICPLCAKGVR  60
LNPNEDPNIT WEKHVNTDCD PSNYEKATKK KKCPVPRCKE QLTFSNTIKC RDCNIDHCLK  120
HRFGPDHSCP GPRKLPFMGF LSSSSSRKEA KTTRPNKASA STSSSSSTSR WSNLLSSAEA  180
GISRLGNDIS QKLQFSSSSS NDGIIEVCPQ CGAKFSSVTS LVEHVEKTHE RNKKQIHGKV  240
TVDVCPKCSR GFRDPVDLVN HIERDHRGTS KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g056220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023390.0AC002339.3 Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence.
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-157SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A178VRV31e-155A0A178VRV3_ARATH; Uncharacterized protein
STRINGXP_010505969.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-154C2H2 family protein