PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g055090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 291aa    MW: 32459.5 Da    PI: 7.0103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g055090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.5e-28161221259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  Csa04g055090.1 161 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 221
                     8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-27152221IPR003657WRKY domain
SuperFamilySSF1182902.22E-25156222IPR003657WRKY domain
SMARTSM007742.9E-36160222IPR003657WRKY domain
PfamPF031062.3E-25161221IPR003657WRKY domain
PROSITE profilePS5081120.128161223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEVMSMIFH GMKLVKRLES SLPEKPPESL STSLDEIAKT FDDANERLKM FLEIRNSETV  60
LNQTKPVVVS VSNQMLVQME PGLTMQEYWL RCGGSTSSQG AEAMFHTQLM AVDGGGGRKF  120
TEGSGASGSS TPRQRRRKDE GEEQTVLVAA LRTGNTDMPP DDNHTWRKYG QKEILGSRFP  180
RAYYRCTHQK LYNCPAKKQV QRLNDDPFTF RVTYRGSHTC HIYSIAPISS ATVTATTATG  240
HSIDYGSPIR DMTDAMFGSS GIGANMDFIF PFNDPPHRFR RLDDDGDGHQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21161220968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g055090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935840.0AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740.
GenBankDQ0565750.0DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505825.20.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB51e-170WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LFT81e-175D7LFT8_ARALL; WRKY DNA-binding protein 55
STRINGXP_010505825.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-149WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]