PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g054670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 39193 Da PI: 4.6519 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 85 | 134 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p gk r +lg+f t eAa a+++a+k+++g Csa04g054670.1 85 EYRGVRQRT-WGKWVAEIREP---GKGGRLWLGTFSTSLEAALAYDEAAKAMYG 134 69****999.**********9...4348***********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.44E-29 | 84 | 143 | No hit | No description |
PROSITE profile | PS51032 | 20.758 | 85 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 85 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-19 | 85 | 143 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-12 | 85 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 85 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MGVLEQVANL ASMHFDSPRK RKSRGERERD VAEILRKWRE YNQLTETDSS YIDGGVPKPI 60 RKAPTKGSRK GCMRGKGGPE NGNCEYRGVR QRTWGKWVAE IREPGKGGRL WLGTFSTSLE 120 AALAYDEAAK AMYGYSARLN LPHFTTNGSS STAATVSGSV TAFSDKSEVC ARYDTNVISQ 180 AKLEGSSDEY VTFDSSQCIE EKLNVKEEER EPNSVDAFGT GQESKKETLD DWLMGNGNDQ 240 APFRFDVDET FDISELLGIR DDNNASGQDT MQCQVNRKPN FSDQMQFQDA NLPESLNPME 300 IANPEVDYGY HYTQQSEMEN NGIGLDHRRF QDLDVHEDLD FGGGKDVHGA T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-17 | 86 | 142 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g054670.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254595 | 0.0 | AC254595.1 Capsella rubella clone CAP16-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505763.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q8LFR2 | 1e-163 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | R0FWR9 | 0.0 | R0FWR9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010505763.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8532 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-135 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|