PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g054370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 27013.5 Da PI: 4.4479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 115 | 203 | 2 | 81 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 +k+l++sdv k +rl lp++ +ee +++ + +++++ ++g +++++k+ +++ ++ vlt+GWkeFv gL+ + Df++ Csa04g054370.1 115 KKQLMSSDVDKDqCRLLLPRQLVEETmlpfleeSENLSLGLDVSVYGPDGevQQMKFKI--WNGVRTPVLTSGWKEFVAMYGLEmTSDFIT 203 699*******998****************9976333447889********555555555..***********************9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.6E-8 | 114 | 219 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.67E-16 | 114 | 212 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-14 | 115 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-15 | 115 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.7E-8 | 116 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAFTQEEDED LHVAAWTLMH LHQAQAQYLN QSPEEDDIDD EVESTPLSQV SQAHQKPSRK 60 RKYADNNQNT MKINKEELFS EETLRLIQAW YRDDPDPLEI FQDAEVTRRF SKPLKKQLMS 120 SDVDKDQCRL LLPRQLVEET MLPFLEESEN LSLGLDVSVY GPDGEVQQMK FKIWNGVRTP 180 VLTSGWKEFV AMYGLEMTSD FITDWMFRHI KTQKICFAID YVRFSLIDPV G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g054370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505731.1 | 1e-173 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
Swissprot | Q9ZR14 | 1e-83 | Y4317_ARATH; Putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | D7MQ42 | 1e-85 | D7MQ42_ARALL; Uncharacterized protein | ||||
STRING | XP_010505731.1 | 1e-173 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 5e-86 | B3 family protein |
Publications ? help Back to Top | |||
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