PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g050830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 429aa MW: 46910 Da PI: 9.3759 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8e-32 | 163 | 219 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++v ei+Y+geHnh+k Csa04g050830.1 163 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSV-EGQVSEIVYQGEHNHSK 219 9***************************************.***************85 PP | |||||||
2 | WRKY | 103 | 1.7e-32 | 350 | 407 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ Csa04g050830.1 350 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 407 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-27 | 160 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 161 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 162 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 163 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 163 | 220 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-32 | 339 | 407 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 344 | 409 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-27 | 345 | 407 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-38 | 349 | 408 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-26 | 350 | 407 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 429 aa Download sequence Send to blast |
MEVKEGERVV IAKPVASRPS SSTSFRNFTE LLTNSVTVSP QSNCHDIVDA AIRPKTLRFN 60 QPVAASVSCP RVEGNSNGKS CDDSDSKSYV VYKPKAKLVS KATVSALANM LQGNMQQTWR 120 QPEAVAYGKI VSQTTYRAGP NLVQKVPSFT EPETSIGDRS SVDGYNWRKY GQKQVKGSEC 180 PRSYYKCTHP KCPVKKKVER SVEGQVSEIV YQGEHNHSKP SCPLPRRASS TTSSGFQKPP 240 KAVASEGSMG QDPTNSLYSS LWSNQSNESS KTGTEEMNEG CVITPFEFAV PKSTNSNAGT 300 SDTGCRSSQC DEGSNGGELD DPNRNKRRKN EKQSSEAGVS QGSVESDSLE DGFRWRKYGQ 360 KVVGGNAYPR SYYRCTSANC RARKHVERAS DDPRAFITTY EGKHNHHLLL NPPTSSSTLP 420 FNSPQLSK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 163 | 408 | 3 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 163 | 408 | 3 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g050830.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB289607 | 0.0 | AB289607.1 Arabidopsis thaliana TTG2 mRNA for WRKY transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505304.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like isoform X1 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | A0A384L2V3 | 0.0 | A0A384L2V3_ARATH; WRKY44 | ||||
TrEMBL | A7BI37 | 0.0 | A7BI37_ARATH; WRKY transcription factor | ||||
STRING | XP_010505304.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |