PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g049120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 30754.6 Da PI: 9.3779 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101 | 1.6e-31 | 42 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGf ++P+d e++ L +k + l l++ i+ v+iy+++P++L +k+k+ +++ w+f skr+k + gkr++r+ k gyW+at +k Csa04g049120.1 42 PPGFNYRPNDLEVI-SLLGRKQDYLGgnrdL-LANLsIHLVNIYESNPEQLSEKFKKgNDTYWFFISKRNKMGKGGKRQKRVDKGGYWHATVASK 134 9*************.7787775433333332.33445**************9766662555778888888888889******************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ lvg k+ L +y g++p+g+kt+W+mhey + Csa04g049120.1 135 KIDA-GQGLVGYKTALSYYVGKQPNGVKTSWLMHEYWI 171 **99.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-38 | 35 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.935 | 41 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-15 | 42 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MSMHGRNKRK ERSLPEPEPS EIPSSSADHH LSSSPSTRPC FPPGFNYRPN DLEVISLLGR 60 KQDYLGGNRD LLANLSIHLV NIYESNPEQL SEKFKKGNDT YWFFISKRNK MGKGGKRQKR 120 VDKGGYWHAT VASKKIDAGQ GLVGYKTALS YYVGKQPNGV KTSWLMHEYW IDQCPPSADD 180 DVKDYSMCKI YRSTQAINKK KKAEEEENEK QKKVLQQQPP TVEYHQPQQY PHAPLDSYQP 240 QPHHDIAYQQ QLLFQPAPLD SYQQLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-21 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-21 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-21 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-21 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-21 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-21 | 33 | 199 | 9 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-21 | 33 | 199 | 9 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g049120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431411.1 | 1e-158 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | R0H259 | 2e-77 | R0H259_9BRAS; Uncharacterized protein | ||||
STRING | XP_010431411.1 | 1e-158 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 1e-66 | NAC domain containing protein 63 |