PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g047880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 163aa MW: 18028 Da PI: 10.9334 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 250.8 | 8.9e-77 | 21 | 162 | 159 | 301 |
GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253 k+ k k ++kk+++s k++k+ s +++k+ekk++d++++ s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+ga Csa04g047880.1 21 SKALKPKTPRKKRSASYKSKKTLSI-PETKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGA 114 4666777777777888777777776.699****************************************************************** PP GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 R+agrKmS+ga+ klL++La+eGy+ls+pvDLk+hWA+HGtnkfvt + Csa04g047880.1 115 RLAGRKMSNGAYVKLLARLAGEGYSLSHPVDLKNHWARHGTNKFVTFK 162 **********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 8.8E-61 | 1 | 162 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.9E-66 | 22 | 162 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MITETVWKPW NRSPRISLPP SKALKPKTPR KKRSASYKSK KTLSIPETKR EKKNLDINID 60 ISSFDTSGVP PPVCSCTGVS RVCYKWGMGG WQSSCCTISI STYPLPMSTT RPGARLAGRK 120 MSNGAYVKLL ARLAGEGYSL SHPVDLKNHW ARHGTNKFVT FK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g047880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU089962 | 0.0 | EU089962.1 Olimarabidopsis pumila GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516733.1 | 1e-99 | PREDICTED: protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 2e-94 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A7UN69 | 8e-94 | A7UN69_OLIPU; GAGA-binding transcriptional activator (Fragment) | ||||
STRING | XP_010516733.1 | 4e-99 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 5e-89 | basic pentacysteine 7 |