PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g047520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 416aa MW: 46997.6 Da PI: 8.9987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g047520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	2e-12	258	304	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+Er+RR+++N++f Lr ++P+ K++K + L ++ YIk+L Csa04g047520.1 258 RNHVEAERQRRKQLNQRFYALRGVVPNV-----SKMDKGSLLSDTIAYIKEL 304 589**********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.1E-39	31	191	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.583	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-17	258	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-10	258	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.56E-12	258	309	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-16	259	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-15	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MTQYNNAEDS TMEGFMSFSD NSKMWPVETV QKRLQAVLDG THKGWTYAIY WQPLLDNFDD 60 TVLVWGDGVY KGQEDKRKTM SSPAEKVTCE LNHEDNDMIV KDIEWFFLKS MSWSFSRGSG 120 LVGHAFSTST PVWVSGLDQI RMSDIERAKA GGDFGTQTIA CIPLANGVVE LGSTELIPQS 180 SDLINKVPIL FNSNTFHHSL SRDRVNVAPS SSSMVLSKSR KLESGCSSPT NKSFSSEVSE 240 KLLKKRGKKS SKGREGPRNH VEAERQRRKQ LNQRFYALRG VVPNVSKMDK GSLLSDTIAY 300 IKELKSKVEK AVYERNEIQI QLEEVKRKVA SSKETEGMEI EVKIIECYAK IKVKSSKQNH 360 PEARFMKALK DLELEVDHAS IVVVEDLMVQ QATVKMDFRI YTQEQLRTML ISKIN*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MTQYNNAEDS TMEGFMSFSD NSKMWPVETV QKRLQAVLDG THKGWTYAIY WQPLLDNFDD  60
TVLVWGDGVY KGQEDKRKTM SSPAEKVTCE LNHEDNDMIV KDIEWFFLKS MSWSFSRGSG  120
LVGHAFSTST PVWVSGLDQI RMSDIERAKA GGDFGTQTIA CIPLANGVVE LGSTELIPQS  180
SDLINKVPIL FNSNTFHHSL SRDRVNVAPS SSSMVLSKSR KLESGCSSPT NKSFSSEVSE  240
KLLKKRGKKS SKGREGPRNH VEAERQRRKQ LNQRFYALRG VVPNVSKMDK GSLLSDTIAY  300
IKELKSKVEK AVYERNEIQI QLEEVKRKVA SSKETEGMEI EVKIIECYAK IKVKSSKQNH  360
PEARFMKALK DLELEVDHAS IVVVEDLMVQ QATVKMDFRI YTQEQLRTML ISKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	7e-35	28	194	7	195	Transcription factor MYC3
4rqw_B	7e-35	28	194	7	195	Transcription factor MYC3
4rs9_A	7e-35	28	194	7	195	Transcription factor MYC3
4yz6_A	7e-35	28	194	7	195	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	267	RNHVEAERQRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g047520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507550.1	0.0	PREDICTED: transcription factor MYC2-like
Swissprot	Q9LUK7	1e-105	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0HCK7	0.0	R0HCK7_9BRAS; Uncharacterized protein
STRING	XP_010507550.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21760	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	7e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]