PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g044720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24038.3 Da PI: 7.8731 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119 | 2.7e-37 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+ dC++apyf +e+ p++fa++hk+FGasnv+k+l ++p ++r++++ +++y+Aear++dPvyG+v+++++lqqq++ l+a+l Csa04g044720.1 11 PCGACKFLRRKCVIDCIFAPYFSSEEsPARFAAIHKVFGASNVSKILLHVPIQDRHEVVVTMAYQAEARLHDPVYGCVSHVFALQQQVAFLQAQL 105 7*********************997769******************************************************************9 PP DUF260 95 allkee 100 +lk++ Csa04g044720.1 106 MQLKAN 111 998865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.574 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-36 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MASNGTGTGS PCGACKFLRR KCVIDCIFAP YFSSEESPAR FAAIHKVFGA SNVSKILLHV 60 PIQDRHEVVV TMAYQAEARL HDPVYGCVSH VFALQQQVAF LQAQLMQLKA NLAHQTISTV 120 AGDLSKISEM TWQQTTGYTI PYMPYSHENP NKPVSPLSSI ESLEYSHTSS EVTTSVQDIQ 180 TGRFGFHQDG YPNKKRSLSY CNSDLGELQA LARMMRN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-37 | 2 | 127 | 2 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-37 | 2 | 127 | 2 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g044720.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504777.1 | 1e-164 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-97 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | R0HJB8 | 1e-149 | R0HJB8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504777.1 | 1e-164 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-85 | lateral organ boundaries-domain 16 |