PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g042970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 428aa    MW: 48928.9 Da    PI: 9.1625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g042970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.68.9e-31461752128
             NAM   2 ppGfrFhPtdeelvveyLkkk..vegkklelee.v.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     ppG+ ++P+d e++   L +k    g++ +l     i+ v+iy+++P++L  +  ka+++ew+f skr+k+ + gkr++r +k gyW+at  +k+
  Csa04g042970.1  46 PPGVNYRPKDLEVI-SLLGRKedYLGENRDLLAtLsIHLVNIYESNPEELSvNFKKANDTEWFFKSKRNKTGKDGKRQKRDAKGGYWHATVASKK 139
                     9*************.777777343444433332135**************94444557889*999999999999********************* PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa04g042970.1 140 IDA-GQGLVGYKTALSYYVGKQPNGVKTSWLMHEYWI 175
                     *99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3535196IPR003441NAC domain
PROSITE profilePS5100536.01745197IPR003441NAC domain
PfamPF023651.3E-1346173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DDHHMSSSPS TRPCFPPGVN YRPKDLEVIS  60
LLGRKEDYLG ENRDLLATLS IHLVNIYESN PEELSVNFKK ANDTEWFFKS KRNKTGKDGK  120
RQKRDAKGGY WHATVASKKI DAGQGLVGYK TALSYYVGKQ PNGVKTSWLM HEYWIDQCPP  180
SADDDVKDYS MCKIYQSTQA INKQKKAEEE ENKKQRKVVQ QQVQPPTVEY HQPHAPLDSY  240
QPQPHHDIAY QQQHLFQPAP LDSYQPQPRD LAYQQQQQQQ FWPGPLASYR THQRQFWAAR  300
PDSHQLQPHY DSAYQQFIRM LEGDKQQQQP SLAPAPSPQG QDSRSGMVMT QEDGFFNPIN  360
ELLNYEEGHG VVTEQKQQEQ SAPILPPPPP QVMKKKKMVS ILSSNNKSKV HRFLLLLKVK  420
TIQHPGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19342033171NO APICAL MERISTEM PROTEIN
1ut4_B2e-19342033171NO APICAL MERISTEM PROTEIN
1ut7_A2e-19342033171NO APICAL MERISTEM PROTEIN
1ut7_B2e-19342033171NO APICAL MERISTEM PROTEIN
3swm_A2e-193720312174NAC domain-containing protein 19
3swm_B2e-193720312174NAC domain-containing protein 19
3swm_C2e-193720312174NAC domain-containing protein 19
3swm_D2e-193720312174NAC domain-containing protein 19
3swp_A2e-193720312174NAC domain-containing protein 19
3swp_B2e-193720312174NAC domain-containing protein 19
3swp_C2e-193720312174NAC domain-containing protein 19
3swp_D2e-193720312174NAC domain-containing protein 19
4dul_A2e-19342033171NAC domain-containing protein 19
4dul_B2e-19342033171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g042970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507484.10.0PREDICTED: uncharacterized protein LOC104784116
STRINGXP_010507484.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-62NAC domain containing protein 63