PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g042950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 281aa    MW: 32403.3 Da    PI: 6.5848
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g042950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.6e-1759131271
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatg 71 
                     ppG++F Ptd+el+ +yLk+ ++++k++   ++ i++v+iy+++P++L +k+++ +ekew+f s+r k++a++
  Csa04g042950.1  59 PPGYQFVPTDQELILHYLKPFLQNNKNSWlLNApIHHVNIYESNPQELSEKFEKgNEKEWFFISERTKQAAKK 131
                     9**********************99955423445**************9666652666999999988887654 PP
2NAM31.84.2e-1012916789128
             NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++ + ++  vg kk+L +y g++p+g+kt W+mhey+ 
  Csa04g042950.1 129 AKKINA-GKGIVGYKKVLEYYVGERPNGVKTCWLMHEYSS 167
                     567777.8899***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3746187IPR003441NAC domain
PROSITE profilePS5100522.15358187IPR003441NAC domain
PfamPF023654.1E-1559166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAIPPRNKCK ARSSPERQTQ PPEWQTQQPP PKQNRDNPSS SSSIVDNYSS PSTKPFNFPP  60
GYQFVPTDQE LILHYLKPFL QNNKNSWLLN APIHHVNIYE SNPQELSEKF EKGNEKEWFF  120
ISERTKQAAK KINAGKGIVG YKKVLEYYVG ERPNGVKTCW LMHEYSSESS SVDNEKVDHA  180
LCKIYLSSKG AKKKKADQEE ENEKLKKEEE AVEHLDLHQP DQSQPHGMVY HQPQYCLLDM  240
IDAWLKTVEE QHGVSVDTQQ QQQEQCTPIL PHDMVYQQPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-165619315171NO APICAL MERISTEM PROTEIN
1ut4_B8e-165619315171NO APICAL MERISTEM PROTEIN
1ut7_A8e-165619315171NO APICAL MERISTEM PROTEIN
1ut7_B8e-165619315171NO APICAL MERISTEM PROTEIN
3swm_A8e-165619318174NAC domain-containing protein 19
3swm_B8e-165619318174NAC domain-containing protein 19
3swm_C8e-165619318174NAC domain-containing protein 19
3swm_D8e-165619318174NAC domain-containing protein 19
3swp_A8e-165619318174NAC domain-containing protein 19
3swp_B8e-165619318174NAC domain-containing protein 19
3swp_C8e-165619318174NAC domain-containing protein 19
3swp_D8e-165619318174NAC domain-containing protein 19
4dul_A8e-165619315171NAC domain-containing protein 19
4dul_B8e-165619315171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g042950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431407.11e-144PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH14e-77D7LVH1_ARALL; Uncharacterized protein
STRINGXP_010431407.11e-144(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-62NAC domain containing protein 64