PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g040710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 404aa    MW: 44206.7 Da    PI: 6.5805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g040710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-14229283357
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     ++kr+rr+ +NRe+ArrsR+RK++++ e  + v +L +e ++L  +l+ ++ +++
  Csa04g040710.1 229 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRSEHSTLLTRLSDMNHKYD 283
                     68******************************************88888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-16227291IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-10228281No hitNo description
PROSITE profilePS5021710.703229283IPR004827Basic-leucine zipper domain
PfamPF001708.0E-12230283IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-10231281No hitNo description
PROSITE patternPS000360234249IPR004827Basic-leucine zipper domain
PfamPF124988.0E-13298382IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MHIVFSVDDL TESFWPIPPP APSPGSTPAP TPSHNMADGM TRSQSEWAFH RLLNELSGSD  60
SSATTNATER SPPPVQSLSR VEETVDETED VVEIQKPQSH HRLPSDDQGN RNRAPLSDPL  120
DSSAGCGVDP NQYHAILKSK LELACAAVAR RVGTVKPEDS SASASNQKQA QGSTVAQTSP  180
GASSVKFSSS TSTQKKPDVP ARQTTSISSR DDSDDDDLDG DADNGDPTDV KRARRMLSNR  240
ESARRSRRRK QEQMNEFDTQ VGQLRSEHST LLTRLSDMNH KYDAAAVDNR ILRADIETLR  300
TKVKMAEETV KRVTGVNPLH WARPNMGIPF NNTPSAPTRI PPNSNHILKP AVPSTTISAG  360
LAPNQRVETA NFLPEQVNRE GMQNPFAPDS NLYETLPHWN HKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243250RRSRRRKQ
2245250SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g040710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0575090.0AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504273.20.0PREDICTED: basic leucine zipper 25 isoform X1
SwissprotQ9M1G60.0BZP25_ARATH; Basic leucine zipper 25
TrEMBLD7LUW00.0D7LUW0_ARALL; Uncharacterized protein
STRINGXP_010504273.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.10.0basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]