PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g040470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 157aa    MW: 18381 Da    PI: 6.7603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g040470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.4e-131213610128
             NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                     +de+++  yL++kv+g+ +   ++ ++++  ++y+ ePw Lp+        + +ew++  kr+ ky +   ++ +  +g W       +++s+ +
  Csa04g040470.1  12 SDEDIIEGYLRPKVNGEATANPRFiVDNMeeELYTREPWLLPQptD--PilNPQEWFYLGKRNWKYLH---AEGVHCEGAWILVQGRSPIVSTeS 101
                     79***************955544424433348*********96332..233678********999975...5556678****7766677777547 PP

             NAM  97 gelvglkktLvfy...kgrapkgektdWvmheyrl 128
                     ge++g    + +    k+++     ++W+m eyrl
  Csa04g040470.1 102 GEVIGATMRFRYCfrkKNEKTAMAYSSWFMREYRL 136
                     77888777777765444455555689*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.2073155IPR003441NAC domain
PfamPF023657.0E-810136IPR003441NAC domain
SuperFamilySSF1019411.96E-2212153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVREGEVRSR ISDEDIIEGY LRPKVNGEAT ANPRFIVDNM EEELYTREPW LLPQPTDPIL  60
NPQEWFYLGK RNWKYLHAEG VHCEGAWILV QGRSPIVSTE SGEVIGATMR FRYCFRKKNE  120
KTAMAYSSWF MREYRLCDES NPYNPRHVLC KITCNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g040470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292493.11e-104NAC domain-containing protein 96
TrEMBLR0FSJ71e-102R0FSJ7_9BRAS; Uncharacterized protein
STRINGXP_006292493.11e-103(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.14e-59NAC domain containing protein 27