PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g039140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 241aa MW: 28248.4 Da PI: 6.2689

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g039140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.6e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+lv+ v++lG ++W++ a g++R++k+c++rw +yl Csa04g039140.1 11 RGPWHEEEDERLVKFVTLLGERRWDSLATVSGLKRSGKSCRLRWMNYL 58 89********************************************97 PP
2	Myb_DNA-binding	49.4	1.1e-15	65	108	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+++ eE +++++++++G++ W++Iar+++ gRt++++k++w+++ Csa04g039140.1 65 GPMSSEEVRIILQLHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108 789****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.512	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.75E-27	9	105	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-20	12	65	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-8	13	58	No hit	No description
PROSITE profile	PS51294	25.825	59	113	IPR017930	Myb domain
SMART	SM00717	1.5E-15	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-14	65	108	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-9	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-23	66	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MESKKQETLV RGPWHEEEDE RLVKFVTLLG ERRWDSLATV SGLKRSGKSC RLRWMNYLNP 60 KLKHGPMSSE EVRIILQLHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHFR KKEEAQNCDK 120 IIDWRGNKGE ELFHKYKETE IMRTKVTSQE HGFDETVKES NQRTMESGQE TNGGICETES 180 FGIMNSPYEN RISDWISEIS TDQSEANVSE GSSSENNINN ASWWFQETRD FEEFSCSLWS 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-28	9	112	2	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g039140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117256	1e-155	AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBank	AY519599	1e-155	AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBank	BT005257	1e-155	BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504080.1	1e-178	PREDICTED: transcription factor MYB24-like
Swissprot	Q9SCP1	1e-136	MYB27_ARATH; Transcription factor MYB27
TrEMBL	R0FT62	1e-152	R0FT62_9BRAS; Uncharacterized protein
STRING	XP_010504080.1	1e-177	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11397	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-127	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]