PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g037730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 276aa    MW: 31949.1 Da    PI: 6.322
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g037730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.62e-33281182101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e+++d+++++++sw++ g+sfvv+d  +f++ +Lp++Fkh nf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++
  Csa04g037730.1  28 FLTKTFEMVDDPNTDQIVSWNRGGTSFVVWDLYSFSTILLPRHFKHCNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLVGQRQLLKN 113
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr++
  Csa04g037730.1 114 IKRRT 118
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5624117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3324117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNPFVPEGYD QQPPQPMEGL HEVGPPPFLT KTFEMVDDPN TDQIVSWNRG GTSFVVWDLY  60
SFSTILLPRH FKHCNFSSFI RQLNTYGFRK IEAERWEFAN EGFLVGQRQL LKNIKRRTTF  120
TTSSSSSSTP SSHDAACNEL RREKQVLMME LMSLRQQHQT TKSYVKAMEQ RIEGAEMKQR  180
QMMSFLARAM QSPSFLHQLL KQRDKRIKEI EDETAKRKRG SSSVSELEAL ALEMQGYGKQ  240
RIMLEEDDHH LVVERELDDG FWEELLSDES LASTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-242611918122Heat shock factor protein 1
5d5u_B1e-241911917131Heat shock factor protein 1
5d5v_B1e-241911917131Heat shock factor protein 1
5d5v_D1e-241911917131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g037730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503900.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-167HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLD7LTZ91e-166D7LTZ9_ARALL; AT-HSFA7A
STRINGXP_010503900.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-154heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]