PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g036270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 551aa    MW: 62389.7 Da    PI: 5.2611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g036270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.11.7e-9317651322365
            GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiD 116
                     ++L +++e +s+ g+p+ R+ +yf+eAL+++ ++         pps  s    ++ + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+D
  Csa04g036270.1 176 ETLIQIRESVSELGNPIVRVGFYFLEALSHKETE--------SPPSLLS---LEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSQNIHIVD 259
                     6899**************************9998........4666666...99***************************************** PP

            GRAS 117 fdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                     f+i qG+QW a+lqaLa+R++++p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fefn+ v + ++ l+ +++rv+p+E+l+Vn++l
  Csa04g036270.1 260 FEIFQGIQWSAMLQALATRASDKPtRIRVSGIPAPSLGdsPEMSLIATGNRLRDFAAILDLNFEFNP-VLTPIQLLTGSSFRVEPDEVLVVNFML 353
                     ********************76666***********9988888999*********************.799************************ PP

            GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                     +l++llde++++     + L+l  sl+P++v++ e e++ n+ +F +r+ ++l++ysa+f+sle +l r+ +er  vEr+l+gr+i+n+v ++++
  Csa04g036270.1 354 ELYKLLDETATSVG---TALRLAGSLNPRIVTLGEYEVSFNRVEFSNRVKNSLRFYSAVFESLEPNLERDPKERLRVERVLFGRRISNLVRTSNS 445
                     ******99999999...9************************************************************************87765 PP

            GRAS 304 e....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdr 365
                     +    r+e +e++++Wr  +e+aGF+ v+ s++a++qaklll +++ s  y++ e++  ++ l W++ 
  Csa04g036270.1 446 NkpetRFELMEEKKQWRVLVEKAGFELVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNSS 513
                     433359999*************************************9999*****9999999***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.51130500IPR005202Transcription factor GRAS
PfamPF035145.8E-91176513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVYMRTDSGN LMAIAQQLIK QKQEQEQEQQ ERQQHEQETQ SFGFTIPSSD LSDPFQVTTD  60
PVFPFPHLEH HHQNAFASDG LRFIDEKFGS DEWMESLING GYSLQTNPDF PIYGHDPFVT  120
FPSQLNRVNK SPSPPSPPQH HPPHPPPPPP QPDFDLNQPI LKAIHDYARK PKTKPETLIQ  180
IRESVSELGN PIVRVGFYFL EALSHKETES PPSLLSLEDF ILSYKTLNDA CPYSKFAHLT  240
ANQAILEATN QSQNIHIVDF EIFQGIQWSA MLQALATRAS DKPTRIRVSG IPAPSLGDSP  300
EMSLIATGNR LRDFAAILDL NFEFNPVLTP IQLLTGSSFR VEPDEVLVVN FMLELYKLLD  360
ETATSVGTAL RLAGSLNPRI VTLGEYEVSF NRVEFSNRVK NSLRFYSAVF ESLEPNLERD  420
PKERLRVERV LFGRRISNLV RTSNSNKPET RFELMEEKKQ WRVLVEKAGF ELVKPSNYAV  480
SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NSSPSPFGVD PPDSINLIQA GPTCRLLFFL  540
PIVDKFNLVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1191575141367GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g036270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426606.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FMQ80.0R0FMQ8_9BRAS; Uncharacterized protein
STRINGXP_010426606.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]