PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g035300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 184aa MW: 21329 Da PI: 8.4973 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.2 | 1.3e-11 | 72 | 130 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk +NRe+A+rsR++K++ +ee +L+++N++L ++l + ++++ +e+ Csa04g035300.1 72 RKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKTQNHELTNQLRYVSYHCQRTNTEN 130 6789*****************************************99999999888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-10 | 65 | 125 | No hit | No description |
SMART | SM00338 | 3.5E-12 | 68 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 9.7E-9 | 70 | 116 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.335 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-9 | 72 | 120 | No hit | No description |
CDD | cd14702 | 3.83E-17 | 73 | 124 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 75 | 90 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MMSTISPVFS AEPSLATFVP AFETGFTPWD ISHLFSVFDS SLDPIQSPAH DFASVNRTSS 60 DVAPTEENTH ERKKKRKLSN RESAKRSREK KQKHLEEMSI QLNQLKTQNH ELTNQLRYVS 120 YHCQRTNTEN ERLRLENRIL QDKLLNIRQV LMFRQIERSL NCSTWPCDNS TVVTVQQDPS 180 MIY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 70 | 77 | ERKKKRKL |
2 | 71 | 92 | RKKKRKLSNRESAKRSREKKQK |
3 | 72 | 77 | KKKRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g035300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503643.1 | 1e-135 | PREDICTED: bZIP transcription factor 11-like | ||||
TrEMBL | D7LSY0 | 4e-98 | D7LSY0_ARALL; BZIP transcription factor family protein | ||||
STRING | XP_010503643.1 | 1e-134 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49760.1 | 2e-84 | basic leucine-zipper 5 |