PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g033880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 20283.9 Da PI: 7.2182 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 78.3 | 1.3e-24 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+l+ C Cv p+fp+++ +f+ vh+ FGa nv ++l++ + e+re+a++sl+y Aear rd ++G++g+il++++ l+++k+++ Csa04g033880.1 16 RCAVCKILNDPCDLTCVSKPHFPSHD-TRFEDVHQTFGAMNVRNILNNFdSLEQREIAVNSLCYAAEARRRDLISGVHGIILHYENILNNMKQDI 109 6**********************998.89********************66678****************************************9 PP DUF260 95 allke 99 +++ + Csa04g033880.1 110 NYAVN 114 98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.202 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-23 | 16 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGLREKRKQR RVAYNRCAVC KILNDPCDLT CVSKPHFPSH DTRFEDVHQT FGAMNVRNIL 60 NNFDSLEQRE IAVNSLCYAA EARRRDLISG VHGIILHYEN ILNNMKQDIN YAVNDIETNM 120 GHDQVPKYFD LPIPDDFFVT STSLNSYIEK IKNLNIRMRE DQKMGDGHGA HGASTSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-15 | 17 | 116 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-15 | 17 | 116 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 9 | REKRKQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g033880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869811.1 | 3e-74 | LOB domain-containing protein 32 | ||||
Swissprot | O49651 | 1e-61 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | D7ME15 | 7e-73 | D7ME15_ARALL; Uncharacterized protein | ||||
STRING | XP_010412638.1 | 8e-83 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 5e-64 | LOB domain-containing protein 32 |