PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g009800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 464aa    MW: 50576.6 Da    PI: 10.3764
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g009800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.4e-09253292443
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                     e k +r v  skRr++++ KA  L+ L +a++av + s++
  Csa04g009800.1 253 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 292
                     77899********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.302.8E-2454126IPR014722Ribosomal protein L2 domain 2
SMARTSM013825.4E-6555188IPR022669Ribosomal protein L2, C-terminal
SuperFamilySSF501045.3E-4557193IPR008991Translation protein SH3-like domain
PfamPF039471.5E-4757186IPR022669Ribosomal protein L2, C-terminal
Gene3DG3DSA:4.10.950.101.1E-24128204IPR014726Ribosomal protein L2, domain 3
SMARTSM004328.1E-16242301IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.32242292IPR002100Transcription factor, MADS-box
CDDcd002668.86E-20243322No hitNo description
SuperFamilySSF554552.62E-15244328IPR002100Transcription factor, MADS-box
PfamPF003192.0E-8253295IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSALMALCRA RASSSLFNTM IRPAFRSFST GFAEAQNKSL VAQMKEEMLH MDINSMVGSS  60
MPLGMMRIGT IIYNIEMNPG QGAKMVRAAG TNAKILKEHA SGKCLLKLPS GNTKWINASC  120
RATIGTLSNP SNGTKKLRKA GQSRWLGIRP TVRGLAKNPC DHPHGGGEGK SKSSGSRGRT  180
SVTPWGKPCK GGYKSASVKK KKKRLAAAAA KIFLFALYLF VSVGNIMPSS STNASESTMK  240
KGTKRKIEIK KRETKQQRAV ACSKRRQTVF SKAADLCHLS GANIAVFVTS PSEITDVVYS  300
FSGYSPAQEI ADCYLNRKPP PKIDVKAQST KLGFWWEDPD LYNSCDDLSE LNILEDRIER  360
VKKHVLACLE KKEKSQPLVA NNEQNPITDE DCDRGFGWLS LKAFDNTSEA LEAVAKLLEG  420
TPSKGLRKFL KANCDGETLA VADSKLGNII KEKLVVSDML FHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5myj_BD2e-335220512126950S ribosomal protein L2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197204VKKKKKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g009800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0638310.0AY063831.1 Arabidopsis thaliana unknown protein (At2g44065) mRNA, complete cds.
GenBankAY0912810.0AY091281.1 Arabidopsis thaliana unknown protein (At2g44065) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.13e-69AGAMOUS-like 39