PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g002610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 235aa MW: 26802.3 Da PI: 7.9635 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.4e-22 | 32 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++Lee++++ +r+p++e+++++A+kl +++ ++V++WFqN++a+e++ Csa04g002610.1 32 SRWNPTPEQITTLEEVYRSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARERQ 91 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.7 | 2.2e-37 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+PtpeQi+ Lee+y+sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRerqk+ Csa04g002610.1 30 TTSRWNPTPEQITTLEEVYRSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARERQKR 93 679***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.677 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-6 | 29 | 96 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-13 | 31 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-9 | 32 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-19 | 32 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.64E-5 | 33 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
EINGNDHHQL VPASSGEHDD GKSNISVAAT TSRWNPTPEQ ITTLEEVYRS GTRTPTTEQI 60 QKIASKLRKY GRIEGKNVFY WFQNHKARER QKRRRREGVA TNNVREPHQD VKDSSSGGYR 120 VDRTKSCLSF PQTDPQPQRE LVPASYNKDD NANNEDYGRT KESERASEGG KDITWRNLVT 180 SSSVTQEEPG GEVETREIRT LNLFPVLENQ EKTSWFKEKK NANANQACCD YCFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g002610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254604 | 1e-131 | AC254604.1 Capsella rubella clone CAP23-D18, complete sequence. | |||
GenBank | AC254607 | 1e-131 | AC254607.1 Capsella rubella clone CAP08-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502129.1 | 1e-175 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
Swissprot | Q9ZVF5 | 2e-98 | WOX6_ARATH; WUSCHEL-related homeobox 6 | ||||
TrEMBL | R0HMG9 | 1e-122 | R0HMG9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010502129.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 1e-100 | WOX family protein |