PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g002000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 431aa    MW: 46228.2 Da    PI: 5.1127
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g002000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.6e-341670155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Csa04g002000.1 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 70
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3031373IPR017930Myb domain
SuperFamilySSF466891.22E-171570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-321571IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-251671IPR006447Myb domain, plants
PfamPF002492.0E-91869IPR001005SANT/Myb domain
PfamPF143792.6E-23102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEADNGGGTN SSHASKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH  60
VKSHLQKYRL AKYLPDSSSE GKKTDKKESG DMLSGLDGSS GMQITEALKL QMEVQKRLHE  120
QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS GVLGEPSAPV TGESDPATPA PTSESPLQDK  180
SGKECGPDKS LSVDESLSSY REPLTPDSGC NIGSPDESGG DERSSKKPRL VRGAAGYTPD  240
IVVAHPILES GLNASYHQSD HALAFDQPST SLLGAEDQLD KEFPLVMSSL VFNSRLVMIS  300
NGLVDDGNEV TARAVLFMVA SSVTCYGLSK XKSLSVDESL SSYREPLTPD SGCNIGSPDE  360
SGGDERSSKK PRLVRGAAGY TPDIVVAHPI LESGLNASYH QSDHALAFDQ PSTSLLGAED  420
QLDKVSADNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g002000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0847250.0AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502053.10.0PREDICTED: myb family transcription factor PHL7
RefseqXP_010502054.10.0PREDICTED: myb family transcription factor PHL7
SwissprotQ9SJW00.0PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLD7LQZ50.0D7LQZ5_ARALL; Myb family transcription factor
STRINGXP_010502053.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-169G2-like family protein