PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g060000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34582.6 Da PI: 5.4295 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.1 | 5.2e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL+kk++g +++l + i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + Csa03g060000.1 14 LPPGFRFYPTDEELMVQYLCKKAAGYDFSL-QLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST- 106 79***************************9.89***************8888899*********************************999988. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Csa03g060000.1 107 EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-66 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.549 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-25 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGMQETDPLT QLSLPPGFRF YPTDEELMVQ YLCKKAAGYD FSLQLIAEID LYKFDPWVLP 60 NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIISTEGQR VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDDWVLCRIY KKQSSAQKQV YDNVMNGGRE 180 LSNNGTSSTT SSSSHFEDVL DSFHHEIDNT NFQFSNQNQF STLRPELTEE KTGFNGLVDT 240 PSFDWGGFAG NVEHNSVPEL GMSHVVPSLE YNCGYLKTEE EVESSLEFNN SVGFGYSGQV 300 GGFGFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-123 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g060000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:12646039, ECO:0000269|PubMed:15319476}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065268 | 0.0 | AY065268.1 Arabidopsis thaliana putative NAM protein (At1g52890) mRNA, complete cds. | |||
GenBank | AY117224 | 0.0 | AY117224.1 Arabidopsis thaliana putative NAM protein (At1g52890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500913.1 | 0.0 | PREDICTED: NAC domain-containing protein 19-like | ||||
Swissprot | Q9C932 | 0.0 | NAC19_ARATH; NAC domain-containing protein 19 | ||||
TrEMBL | D7KJM1 | 0.0 | D7KJM1_ARALL; ANAC019 | ||||
STRING | XP_010500913.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 0.0 | NAC domain containing protein 19 |