PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g059500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 794aa MW: 91369 Da PI: 8.2401

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g059500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.2e-21	187	270	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l Csa03g059500.1 187 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 270 69***************************************9988.....999******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-19	187	270	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-24	388	480	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	675	711	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	679	707	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	686	713	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
VGENARVTSR ALKRPSPSEE EAKPTYKKVN TRAKKSPSRV GSFVQNPIRI HPVPISFTTL 60 LRQLNKAKCF SKKIEVGRGT KSPMERSEPV DEDVQASEYL QNDEILERDD PMSDGGCTLR 120 IGDDDEALVC SSDHEIDVGF CQNQERKSED DVTTEEFDEQ SGLLVERKEF EAPAVGMEFE 180 SYDDAYNYYN CYATEVGFRV RVKNSWFKRR SKEKYGAVLC CSSQGFKRIN DVNRVRKETR 240 TGCPAMIRMR QVDSKRWRVL EVTLDHNHLL GSKLYKSVKR NGTKRKCVSS PVSDAKTIKL 300 YRARVMDTVD NVNPSFTLKK QFQNSAGSPD LLNLKKGDSA SIYNYFCRMQ LTNPTFFYLM 360 DVNDEGQLRN VFWADAFSKV SCSYFGDVIF IDNSYISGKF EIPLVTFTGV NHHGKTTLLS 420 CGLLAGETME SYHWLLKVWL SVMKCSPQTI VTDRCKPLEA AISQVFPGSH HRFSLTHIMR 480 KIPEKLGGLH NYDGVRKAFT KAVYETLKVV EFEAAWGFMV HNFGIVDNEW LRSLYEERVK 540 WAPVYLKDTF FAGIAAAHPG ETLNPFFERY VHKQTPLKEF LDKYELALQK KHKEETLSDM 600 ESLNSNTAEL KTKCSFETQL SRIYTRNMFK KFQVEIEEMY SCFSTTQIHV DGPLVIFLVK 660 ERVQAESNRR EIRDFEVLYN RSVGEVRCIC SCFNFYGYLC RHALCVLNFN GVEDLPLRYI 720 LPRWRKDYKR IHFAGNALTG FVDGTDRNQW FDQLYKNALQ VVEEGAFSLD HYKVALQALQ 780 QSLDKVNSVE EKQ*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

VGENARVTSR ALKRPSPSEE EAKPTYKKVN TRAKKSPSRV GSFVQNPIRI HPVPISFTTL  60
LRQLNKAKCF SKKIEVGRGT KSPMERSEPV DEDVQASEYL QNDEILERDD PMSDGGCTLR  120
IGDDDEALVC SSDHEIDVGF CQNQERKSED DVTTEEFDEQ SGLLVERKEF EAPAVGMEFE  180
SYDDAYNYYN CYATEVGFRV RVKNSWFKRR SKEKYGAVLC CSSQGFKRIN DVNRVRKETR  240
TGCPAMIRMR QVDSKRWRVL EVTLDHNHLL GSKLYKSVKR NGTKRKCVSS PVSDAKTIKL  300
YRARVMDTVD NVNPSFTLKK QFQNSAGSPD LLNLKKGDSA SIYNYFCRMQ LTNPTFFYLM  360
DVNDEGQLRN VFWADAFSKV SCSYFGDVIF IDNSYISGKF EIPLVTFTGV NHHGKTTLLS  420
CGLLAGETME SYHWLLKVWL SVMKCSPQTI VTDRCKPLEA AISQVFPGSH HRFSLTHIMR  480
KIPEKLGGLH NYDGVRKAFT KAVYETLKVV EFEAAWGFMV HNFGIVDNEW LRSLYEERVK  540
WAPVYLKDTF FAGIAAAHPG ETLNPFFERY VHKQTPLKEF LDKYELALQK KHKEETLSDM  600
ESLNSNTAEL KTKCSFETQL SRIYTRNMFK KFQVEIEEMY SCFSTTQIHV DGPLVIFLVK  660
ERVQAESNRR EIRDFEVLYN RSVGEVRCIC SCFNFYGYLC RHALCVLNFN GVEDLPLRYI  720
LPRWRKDYKR IHFAGNALTG FVDGTDRNQW FDQLYKNALQ VVEEGAFSLD HYKVALQALQ  780
QSLDKVNSVE EKQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g059500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY080775	0.0	AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500853.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	R0IMD0	0.0	R0IMD0_9BRAS; Uncharacterized protein
STRING	XP_010500853.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]