PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g058050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 444aa MW: 49503.4 Da PI: 9.1375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g058050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	380	425	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Csa03g058050.1 380 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 425 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	374	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-16	377	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.65E-11	378	429	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-15	379	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	380	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-9	380	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
PNLYLPSVVC FFFSSSSFLL SLTFSFFVFH LTRRRKKNTS RRREILPGEI THQEERNSKA 60 TKMESEFQQQ HFLIHHQQHD HQHQRPRNSG LIRYQSAPSS YFSSFGESIE EFLDRPTSPE 120 TERILSGFLQ TTDTSNNVDS FLHHAFNSDG TEKKPPPEVK TEKEEEEETE IPVTAMEVEI 180 PVGSDSIGYA SVSRNLSQNK KRPRDDRTPP PASNLARHNS SPAGLFSSID VETAYAAVMK 240 SMGGFGGGNV MNTSNTTDAS SLTPRSKLLP PVSRAMSPIS EVDVKPAFSS RLPPRTLSGG 300 FNRSFGNEGS ASSKLSAIAR TQSGGLDQYK TKDEDSASRR PPLAHHMSLP KSLSDIEQLL 360 SDSIPCKIRA KRGCATHPRS IAERVRRTKI SERMRKLQDL VPNMDTQTNT ADMLDLAVQY 420 IKDLQDQVKA LEENRARCRC SSA*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

PNLYLPSVVC FFFSSSSFLL SLTFSFFVFH LTRRRKKNTS RRREILPGEI THQEERNSKA  60
TKMESEFQQQ HFLIHHQQHD HQHQRPRNSG LIRYQSAPSS YFSSFGESIE EFLDRPTSPE  120
TERILSGFLQ TTDTSNNVDS FLHHAFNSDG TEKKPPPEVK TEKEEEEETE IPVTAMEVEI  180
PVGSDSIGYA SVSRNLSQNK KRPRDDRTPP PASNLARHNS SPAGLFSSID VETAYAAVMK  240
SMGGFGGGNV MNTSNTTDAS SLTPRSKLLP PVSRAMSPIS EVDVKPAFSS RLPPRTLSGG  300
FNRSFGNEGS ASSKLSAIAR TQSGGLDQYK TKDEDSASRR PPLAHHMSLP KSLSDIEQLL  360
SDSIPCKIRA KRGCATHPRS IAERVRRTKI SERMRKLQDL VPNMDTQTNT ADMLDLAVQY  420
IKDLQDQVKA LEENRARCRC SSA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g058050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500685.1	0.0	PREDICTED: transcription factor bHLH122-like
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	R0I6R6	0.0	R0I6R6_9BRAS; Uncharacterized protein
STRING	XP_010500685.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]