PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g054960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 333aa    MW: 37530.8 Da    PI: 4.4864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g054960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-1489130146
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                     sg++GVr+++ +g+++AeIr p e   +kr +lg+f t+e Aa+a+
  Csa03g054960.1  89 SGFRGVRRRP-WGKFAAEIRNPFE---KKRMWLGTFPTEEAAAEAY 130
                     79********.**********644...5**********88888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-1589137IPR016177DNA-binding domain
PfamPF008471.9E-989133IPR001471AP2/ERF domain
CDDcd000189.20E-2189132No hitNo description
SMARTSM003803.2E-1590153IPR001471AP2/ERF domain
PROSITE profilePS5103219.40190151IPR001471AP2/ERF domain
PRINTSPR003671.1E-891102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2091138IPR001471AP2/ERF domain
PRINTSPR003671.1E-8113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MISGREEVDI DLNVIKTVNV ICNDPDATDS SSDDDEVKTG NNSTRRRQIK PKPPKRFTSK  60
ICVQTLIKRY ENVSNSTGIK AAGNRKTSSG FRGVRRRPWG KFAAEIRNPF EKKRMWLGTF  120
PTEEAAAEAY HRIKREFDEQ LALGKAEVDL ADLTKPCGVC KREDKEVKST KSSVATRSAN  180
NKKVNKINVV EKTFCSSYVD EDEGMISKML EDPLMTSSIS DIFPDSVVGS NDIWIDNNPT  240
EFDSIFNELK FDILEDDTTT GNEKTFGFKI GDNTIANIFD EADLRDFDQL ANDFQLEDLQ  300
LEDFPMDDFG LFGVPDDYSW FNGTADWIDK SL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g054960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501904.10.0PREDICTED: ethylene-responsive transcription factor ERF117-like
SwissprotQ9M9B21e-131EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLA0A178WIZ61e-142A0A178WIZ6_ARATH; CRF9
STRINGXP_010501904.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-123ERF family protein