PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g052920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 85aa MW: 9105.47 Da PI: 8.8616 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 7 | 30 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++ tG C +Ck++H++ Csa03g052920.1 7 IPECSNYLLTGNCDL-KKCKYHHSM 30 589************.*******95 PP | |||||||
2 | zf-CCCH | 29.2 | 1.6e-09 | 52 | 75 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++f+r+G Ck G+ CkF H+ Csa03g052920.1 52 QAVCPDFSRFGLCKSGPACKFDHS 75 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.554 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.086 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-7 | 52 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MPTRPGIPEC SNYLLTGNCD LKKCKYHHSM NITPIEHGLA LNNKGLPLRP NQAVCPDFSR 60 FGLCKSGPAC KFDHSSSSSS GSKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g052920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010496677.1 | 1e-47 | PREDICTED: zinc finger CCCH domain-containing protein 13-like | ||||
Swissprot | Q3ECU8 | 6e-32 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | D7KC26 | 2e-30 | D7KC26_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | XP_010496677.1 | 4e-47 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48195.1 | 8e-34 | C3H family protein |