PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g039280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 365aa    MW: 39257 Da    PI: 5.4249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g039280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20144193255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Csa03g039280.1 144 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 193
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-34143203No hitNo description
PROSITE profilePS5103223.565144201IPR001471AP2/ERF domain
SMARTSM003804.3E-40144207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32144202IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-23144202IPR016177DNA-binding domain
PRINTSPR003673.6E-11145156IPR001471AP2/ERF domain
PfamPF008471.1E-14145193IPR001471AP2/ERF domain
PRINTSPR003673.6E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADFFGGSGG HGGELMEALQ PFYKSASTSA SDSAFGSSNA AFVSAPNDPY SSSSYYNPHA  60
SFTTPYPDLY AGSMTYPSSF GSDLQQPDSL EQNYQSQFHY QNNITYPHED NTCMLNFIDP  120
NQPGFMTQPG PVSGSGLVSK PAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA  180
ALAYDRAAFK LRGDSARLNF PALRYQTGSS PSDSGEYGPI QAAVDAKLEA ILAEPKNQPG  240
KTERSSRKRA KATASSAEQP AAPQQHSGSG ESDGSGSAIL AEPKNQPGKT ERSSRKRAKA  300
TASSAEQPAA PQQHFGSGES DGSGSPTSDV LVPEMCEEAE MPWNENFMLG KCPSYEIDWA  360
SILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21143208469ATERF1
3gcc_A6e-21143208469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g039280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062280.0AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.
GenBankAC0216660.0AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence.
GenBankAK2284150.0AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21.
GenBankAK2304250.0AK230425.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-35-B04.
GenBankBT0057580.0BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankBT0060780.0BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500062.10.0PREDICTED: ethylene-responsive transcription factor ERF055 isoform X1
SwissprotQ9SKW51e-177ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLR0ID661e-178R0ID66_9BRAS; Uncharacterized protein
STRINGXP_010500062.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-135ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]