PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g038340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 546aa    MW: 61421.3 Da    PI: 4.4834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g038340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.2e-49171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv++yLk+k+ +k+l++ +vi  vd+yk++P++Lp + ++k+++++w++F++r++ky++  r++r t++gyWkatgkd+ +  
  Csa03g038340.1  17 APGFRFHPTDEELVMYYLKRKICRKRLRV-NVIGVVDVYKMDPQELPgQsMLKTGDRQWFYFTPRSRKYPNAARSSRGTETGYWKATGKDRVIEY 110
                     69***************************.99**************96347888999************************************99 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kktLvfy+grap+ge+tdWvmhey++
  Csa03g038340.1 111 -NSRSVGIKKTLVFYRGRAPNGERTDWVMHEYTM 143
                     .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.88716166IPR003441NAC domain
SuperFamilySSF1019419.68E-5617166IPR003441NAC domain
PfamPF023653.0E-2518142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAESSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPQE  60
LPGQSMLKTG DRQWFYFTPR SRKYPNAARS SRGTETGYWK ATGKDRVIEY NSRSVGIKKT  120
LVFYRGRAPN GERTDWVMHE YTMDEDELGR CKYPQDYYAL YKLFKKSGAG PKNGEQYGAP  180
FQEEEWVDDD NEDENTVAVP DQPVVRYEDE RRLFNPVCLQ LEDIDVLLNG IPDAPGVPPR  240
CIPQVHSEEE LQSTLVNDSA RDFVPNSQPY NRPSSFDSLE TTEATSIPLV FEKEDFIEMD  300
DLLIPELGAS STEKAAQVPN HGEFGDFNDF DQLFHDISMS LDMELIDQGT STNLTSVSSF  360
ANDTSNQRQQ FLYQQPQDQT PDNQLNNIMD PSTTLNQFTD EIWFQDDQAV LFDEQQAFSG  420
SFAPPSSGVI PDSTNPTMSV NAQDQERQNG GGTTSQFSSA LWALMDSIPS TPASACEGPL  480
NRTFVRMSSF SRIRFKANGT PVTNTIANKG IRNRGFLLLS IVGALCAIFW VFIATVRVSG  540
RTVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-451814317140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g038340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618130.0AF361813.1 Arabidopsis thaliana F23M19.13/F23M19.13 mRNA, complete cds.
GenBankAY1335520.0AY133552.1 Arabidopsis thaliana At1g34190/F23M19.13 mRNA, complete cds.
GenBankBT0007300.0BT000730.1 Arabidopsis thaliana clone RAFL09-58-M22 (R18947) putative NAM (no apical meristem) protein (At1g34190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499959.10.0PREDICTED: NAC domain-containing protein 17-like
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A178WNW40.0A0A178WNW4_ARATH; NAC017
STRINGXP_010499959.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]