PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g031860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | VOZ | ||||||||
Protein Properties | Length: 490aa MW: 54468.1 Da PI: 5.8961 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 444.1 | 1.7e-136 | 206 | 422 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+el Csa03g031860.1 206 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPEL 300 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelklv Csa03g031860.1 301 FDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLV 395 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kk++kgkvs+ds+adlqk++grlta Csa03g031860.1 396 DGKKNSKGKVSNDSVADLQKQMGRLTA 422 *************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MTGKRTKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQSAR KESRGTDVSL LEEQVNQMLR 60 EWKSELNEPS PASSLQQGAT LGSFSSDICR LLQLCDEEDD ATSKLAAPKP EPADQNLEAG 120 KSAVFQRGYT FVQGKSEHGF PLADHCKDPP LVVGNNNFVG TANLEYNQFD LQQEFEPNFN 180 GGFNDCPSYG VEGPLHISTF MPTICPPPSA FLGPKCALWD CPRPAQGFDW FQDYCSSFHA 240 ALAFNEGPPG MNPVVRPGGI GLKDGLLFAA LSAKAGGKDV GIPECEGAAT AKSPWNAPEL 300 FDLTVLESET LREWLFFDKP RRAFESGNRK QRSLPDYNGR GWHESRKQIM VEFGGLKRSY 360 YMDPQPLHHF EWHLYEYEIN KCDACALYRL ELKLVDGKKN SKGKVSNDSV ADLQKQMGRL 420 TAEFPPENNN MTTTTNTNNN NKRCIKGRPK VNTKVATVNV QNTVEQATDY GVGEEFNYLV 480 GNLSDYYIA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g031860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB125256 | 0.0 | AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds. | |||
GenBank | AK227014 | 0.0 | AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22. | |||
GenBank | BT020261 | 0.0 | BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499389.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X2 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | R0GLR4 | 0.0 | R0GLR4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010460649.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6667 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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