PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g031810.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27325.7 Da PI: 9.2739 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.4 | 1.8e-33 | 2 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Csa03g031810.2 2 ITGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeghE 92 68***********9.89*****999956644322..22222333336**********.566677888******************7333454447 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+s ++ + g kk+Lv+y gr++k+ekt+Wvmh+y+l Csa03g031810.2 93 TRWHKTGKTRPVFS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 141 88************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.57 | 1 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 3 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-34 | 3 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MITGVKFDPS DKEILMHLEA KVSSDKRKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD 60 GQVRHFFHRP SKAYTTGTRK RRKVSTDEEG HETRWHKTGK TRPVFSQSGE AGFKKILVLY 120 TNYGRQKKPE KTNWVMHQYH LGNSEDEKDG EPVLSKVFYQ TQPRQCGNST EPKPKNLVNL 180 NRFSYENTQT GFGYEHGGKS EEASQVIREL VVHEGDGSCS FLRFTCDASK GKESFMKNQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g031810.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 0.0 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019099249.1 | 1e-177 | PREDICTED: NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 1e-168 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | R0GQV5 | 1e-169 | R0GQV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010501633.1 | 1e-178 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-170 | NAC domain containing protein 10 |