PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g031810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 267aa    MW: 30542.3 Da    PI: 10.0821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g031810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24e-33301683128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                      G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + 
  Csa03g031810.1  30 TGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeghET 120
                     7***********9.89*****999956644322..22222333336**********.566677888******************73334544478 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v+s ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Csa03g031810.1 121 RWHKTGKTRPVFS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 168
                     8************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.42528187IPR003441NAC domain
SuperFamilySSF1019414.97E-3429187IPR003441NAC domain
PfamPF023652.2E-1430168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
VSKDGQVRHF FHRPSKAYTT GTRKRRKFST GVKFDPSDKE ILMHLEAKVS SDKRKLHPLI  60
DEFIPTLEGE NGICYTHPEK LPGVSKDGQV RHFFHRPSKA YTTGTRKRRK VSTDEEGHET  120
RWHKTGKTRP VFSQSGEAGF KKILVLYTNY GRQKKPEKTN WVMHQYHLGN SEDEKDGEPV  180
LSKVFYQTQP RQCGNSTEPK PKNLVNLNRF SYENTQTGFG YEHGGKSEEA SQVIRELVVH  240
EGDGSCSFLR FTCDASKGKE SFMKNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g031810.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099249.11e-176PREDICTED: NAC domain-containing protein 10
SwissprotF4HY611e-167NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV51e-169R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_010501633.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-170NAC domain containing protein 10