PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g030070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 22516.8 Da PI: 6.9072 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Csa03g030070.1 52 FSCNYCRRKFYSSQALGGHQNAH 74 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-6 | 49 | 80 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTESDDASRE PAREGETSSN QESNPVSLDL KLNHSFTDDT RSTKCEANPR VFSCNYCRRK 60 FYSSQALGGH QNAHKRERTM AKRAMHMGRM FGHHHRPYTY TSSSLGMQAH SALLHHTLSQ 120 PQPLVSRFHQ QGYFGNNVPL FFDYDDGGGD FFWPGSFRQV VEEAEAPVVV AVKESGFDLN 180 SVAANGCVDN NSSNPDLTLR L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g030070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000103 | 0.0 | AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence. | |||
GenBank | AC004133 | 0.0 | AC004133.3 Genomic sequence for Arabidopsis thaliana BAC F5A9 from chromosome I, complete sequence. | |||
GenBank | AK119018 | 0.0 | AK119018.1 Arabidopsis thaliana At1g24630 mRNA for putative zinc finger protein ZFP7, complete cds, clone: RAFL21-34-I16. | |||
GenBank | ATHZFPG | 0.0 | L39650.1 Arabidopsis thaliana zinc finger protein (ZFP7) mRNA, complete cds. | |||
GenBank | BT005629 | 0.0 | BT005629.1 Arabidopsis thaliana clone U51263 putative zinc finger protein 7, ZFP7 (At1g24625) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499148.1 | 1e-151 | PREDICTED: zinc finger protein 7-like | ||||
Swissprot | Q39266 | 1e-130 | ZFP7_ARATH; Zinc finger protein 7 | ||||
TrEMBL | R0GRJ6 | 1e-131 | R0GRJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010499148.1 | 1e-151 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13999 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 2e-97 | zinc finger protein 7 |
Publications ? help Back to Top | |||
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