PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g029830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 187aa    MW: 21474.3 Da    PI: 9.1564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g029830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-051321691355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+ i++++eeL+ + P++   p++  +   iL  ++eY+++Lq
  Csa03g029830.1 132 RELIRTKIEELKAVTPNC---PQT--DINGILDCTIEYVRHLQ 169
                     66799************9...555..5559************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.413119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-5131169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-6131171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
KSSFCAANVV VSRHEYFTYL SSSIYKYSLE VSALNSRSQP NLRIHNHLNL SKEMNNDEEF  60
LRLWLERVNS LADPEAHSNV RRINNEGGEE NARQKRPAES KSDGKKSRVK RQCATKSSEK  120
SPDELLAKEM KRELIRTKIE ELKAVTPNCP QTDINGILDC TIEYVRHLQL AILFIALHEY  180
VRNNKM*
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g029830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499125.11e-94PREDICTED: transcription factor MEE8-like
SwissprotQ9FRI03e-38MEE8_ARATH; Transcription factor MEE8
TrEMBLR0ILF65e-48R0ILF6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010499125.14e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.11e-40bHLH family protein