PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g028960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 425aa    MW: 47864.5 Da    PI: 9.0692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g028960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C k+F++   L  Hir H
  Csa03g028960.1  9 FVCKFCYKTFPSGKALGGHIRIH 31
                    89*******************99 PP
2zf-C2H211.90.00069369391123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa03g028960.1 369 HECPICFRVFKSGQALGGHKRSH 391
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-7536No hitNo description
Gene3DG3DSA:3.30.160.602.7E-5534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.51936IPR007087Zinc finger, C2H2
SMARTSM003550.057931IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-7929IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003555.55981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
PfamPF139120.00886083IPR007087Zinc finger, C2H2
SMARTSM003550.027121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307121148IPR007087Zinc finger, C2H2
PfamPF139121.1E-4123145IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM003550.14369391IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-10369392IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388369396IPR007087Zinc finger, C2H2
PROSITE patternPS000280371391IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDEGKEKKFV CKFCYKTFPS GKALGGHIRI HSNENSVDSD RFNRVKKKRL VDQREKQQVC  60
CRRCRKKFVS LKALRAHMVC HCEGEKMLQD SQSDTDESET SSAPLRKRSR RVMAHKHKQQ  120
FFCKICDKGF ASLKAISAHM ACHSEGEKML IDSQSDTDSE TSSALKRSKR VMRRSNSESF  180
SNGSLSFDSD IDQEVGEGAY LLMVLSRGSS FKKRRNLVMN SLGESSENNS GIVETKSSSG  240
EELKNLNVKS QVIETDDQLR YANDNGVSLC DSDGSDSDYF MNGPKKSDSD ISVEGSLRNT  300
GFGSEFINTL HRFRNSDKKG SLYELSKSKK DLCSYETDLC ADTNSKIHRY RDSKSPVVKK  360
AGGEKKTSHE CPICFRVFKS GQALGGHKRS HSYENQEHNQ VSEIRNQINL NVPASDIDQW  420
NQRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g028960.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499023.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLR0ISX20.0R0ISX2_9BRAS; Uncharacterized protein
STRINGXP_010499023.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-106C2H2-like zinc finger protein