PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g026360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 304aa    MW: 34524.9 Da    PI: 7.4715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g026360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15113164155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Csa03g026360.1 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 164
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.65E-13111168No hitNo description
SuperFamilySSF474595.76E-17112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPLAAMVYPQ GPFGYLSNCK DFMFHDLYSQ EELVAQDTKH NIDKSCHEQS FVEHGKDEDR  60
QWRDYQQHPL LIPSLIEELG LPANDVEHHP PLQQRRKRRR TRNSKNKEEI ENQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM VPKRTTTHDV  180
EGAKTSTSSL AGPFSDFFSF PQFSTKSSEV PESSSSSAEI EVTVAESHAN IKILAKKKPK  240
QLIKLVASLQ SLRFTLLHLN VTTHQNSILY SISVKVEEGS QLNTVDDIAT ALNQTIRRIQ  300
EES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399QRRKRRR
29599RKRRR
395100RKRRRT
4113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g026360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882340.0AY088234.1 Arabidopsis thaliana clone 4596 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498720.10.0PREDICTED: transcription factor bHLH94-like isoform X2
SwissprotQ9SK911e-178BH094_ARATH; Transcription factor bHLH94
TrEMBLR0IHJ20.0R0IHJ2_9BRAS; Uncharacterized protein
STRINGXP_010498720.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-157bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]