PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g025770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 171aa    MW: 18805.5 Da    PI: 3.9502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g025770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24.1e-087352755
             AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++r++lg++ tae Aa+a++ a ++l+g
  Csa03g025770.1  7 QKTRIWLGSYSTAEAAARAYDVALLCLKG 35
                    369***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.447143IPR001471AP2/ERF domain
CDDcd000187.02E-18145No hitNo description
Gene3DG3DSA:3.30.730.102.2E-17345IPR001471AP2/ERF domain
SMARTSM003801.9E-11349IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-12445IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MFRAPNQKTR IWLGSYSTAE AAARAYDVAL LCLKGPQANL NFPTSSSHHL LDDLLDEKTL  60
MSPKSIQRVA AQAANSFDLV APSSSSAASS PSDHDDNDND DDGMQSLFGS FVDNHAPLMD  120
PSSSWYDQDH NGMFLFDDGA PFDYSPQLNF TTMFDEYLYE DGDIPLWSFS *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g025770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0134821e-146AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence.
GenBankAK1766791e-146AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03.
GenBankAY0859251e-146AY085925.1 Arabidopsis thaliana clone 19721 mRNA, complete sequence.
GenBankBT0246161e-146BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds.
GenBankCP0026841e-146CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498649.11e-121PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE43e-89ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLR0I1V32e-88R0I1V3_9BRAS; Uncharacterized protein
STRINGXP_010498649.11e-120(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-76ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]