PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g024550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 116aa MW: 13131.5 Da PI: 5.2177 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.8 | 1.2e-10 | 24 | 53 | 32 | 57 |
HHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 32 eLAkkl....gLterqVkvWFqNrRakekk 57 ++A++l ++ e++V++WFqNrRa+ k+ Csa03g024550.1 24 QIAAELsehgQIMEKNVYNWFQNRRARSKR 53 5666666666******************97 PP | |||||||
2 | Wus_type_Homeobox | 58.3 | 1.9e-19 | 7 | 55 | 17 | 65 |
Wus_type_Homeobox 17 eelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + y+ + t ++ e+ +i+aeL+e+G+i++kNV++WFQNr+aR+++kq Csa03g024550.1 7 NGTYDGRVMTEEQMETLQIAAELSEHGQIMEKNVYNWFQNRRARSKRKQ 55 55688888899999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 6.33E-6 | 16 | 55 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-9 | 21 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 22 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.203 | 24 | 54 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-8 | 24 | 53 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEQGSLNGTY DGRVMTEEQM ETLQIAAELS EHGQIMEKNV YNWFQNRRAR SKRKQPQTTT 60 VTGPTGDAAV TTEERSYGDS GGFESYEHIL FPSPDRGIEH LLSREKFMEN KFHTG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 54 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g024550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498511.1 | 1e-62 | PREDICTED: putative WUSCHEL-related homeobox 10 | ||||
Swissprot | Q9LM84 | 9e-44 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | R0IAB3 | 5e-51 | R0IAB3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498511.1 | 5e-62 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 4e-35 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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