PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g024540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 199aa MW: 22492 Da PI: 6.6318 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.8e-21 | 79 | 139 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa03g024540.1 79 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 139 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102 | 4e-33 | 78 | 141 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa03g024540.1 78 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 141 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-16 | 73 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 75 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-19 | 75 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.7E-14 | 77 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.8E-19 | 79 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.94E-14 | 79 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEREMQNDAY NGRGRVMTEE QMEILRKQIA VYAVICDQLV LLHNSLSSNH PFSSGMRPMV 60 GGYFDPMGSS SNSHRISSRH RWTPTSTQLQ ILESIYEEGS GTPNRRRIRE IATELSEHGQ 120 ITETNVYNWF QNRRARSKRK QPQTTTTANS QADDVAVTTE ERRSCGDSGG LESYEHILFP 180 SPDLGIEHLL SIGKFLES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g024540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441297 | 0.0 | AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498509.1 | 1e-147 | PREDICTED: WUSCHEL-related homeobox 14-like | ||||
Swissprot | Q9LM84 | 1e-133 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | R0I890 | 1e-132 | R0I890_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498509.1 | 1e-147 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-117 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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