PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g016280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24588.8 Da PI: 8.1257 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 2.9e-12 | 72 | 124 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h+ +Er+RR++ + Lr llP+ ++K s ++ +e+A +YIk+Lq Csa03g016280.1 72 KRAKHKDIERQRRQEAAYLYKSLRYLLPSqY---IKGKRSSSDHVEEAANYIKDLQ 124 79***************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-13 | 68 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-8 | 69 | 128 | No hit | No description |
PROSITE profile | PS50888 | 12.722 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDFANSSLFS LDFPHENDLD FSSLVTSSRL ISFQEPNPII HCAGIQKDGR QKVCETTITS 60 EIRKGDDEPK NKRAKHKDIE RQRRQEAAYL YKSLRYLLPS QYIKGKRSSS DHVEEAANYI 120 KDLQKKIKEI SEKRDRIKRT ITHRSSTSNC SVRSLASSTS SPSSTCSCVG DTHMAVVVSP 180 CLIGLEIVVE EGIEVYFPEI HEKIMEMGRS SYVYLY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 83 | KRAKHKDIERQRR |
2 | 123 | 138 | QKKIKEISEKRDRIKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g016280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494283.1 | 1e-150 | PREDICTED: transcription factor bHLH55-like | ||||
Swissprot | Q9LN95 | 1e-94 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | R0I2Y4 | 6e-99 | R0I2Y4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010494283.1 | 1e-149 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 6e-78 | bHLH family protein |
Publications ? help Back to Top | |||
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