PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g013530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 369aa MW: 40464.9 Da PI: 5.9715

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g013530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.4e-10	217	265	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Csa03g013530.1 217 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 265 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	212	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.02E-11	212	269	No hit	No description
PROSITE profile	PS50888	15.485	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-17	215	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	217	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MGGEGNEGDM GFKHGDDESG ISRIGITPMP PLYAKADPFF SSADWDPVVS GGGSGGFSSS 60 HYPSMAMDNP GMSCFYHYQP GSGSGYASEM PHSLLPFGDC GGGQIGHFLG SDKKGESVAR 120 LIRAGESHDD HHQVSDDRGV LGASPIGKRR QPEAESQWNK KAVEEFQEDP QRGSDQSQKK 180 HKNDQSKETV NKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL 240 VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EINIDIDRIL AKDLLQSRDR 300 NTPTLGLNPF TGFQGTIPNL STTTNPQYNS LPQTTLESEL QNLYQMGFVS NPSTMSSFSP 360 NGRLKPEL*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MGGEGNEGDM GFKHGDDESG ISRIGITPMP PLYAKADPFF SSADWDPVVS GGGSGGFSSS  60
HYPSMAMDNP GMSCFYHYQP GSGSGYASEM PHSLLPFGDC GGGQIGHFLG SDKKGESVAR  120
LIRAGESHDD HHQVSDDRGV LGASPIGKRR QPEAESQWNK KAVEEFQEDP QRGSDQSQKK  180
HKNDQSKETV NKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL  240
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EINIDIDRIL AKDLLQSRDR  300
NTPTLGLNPF TGFQGTIPNL STTTNPQYNS LPQTTLESEL QNLYQMGFVS NPSTMSSFSP  360
NGRLKPEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g013530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	0.0	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	BT012655	0.0	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490708.1	0.0	PREDICTED: transcription factor bHLH74
Swissprot	Q6NKN9	0.0	BH074_ARATH; Transcription factor bHLH74
TrEMBL	R0I6X0	0.0	R0I6X0_9BRAS; Uncharacterized protein
STRING	XP_010490708.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]