PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g013050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 602aa    MW: 63754.9 Da    PI: 9.5807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g013050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09198242144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W+ eEde l  av++ G g+W+tI r       Rt+ q+  rw
   Csa03g013050.1 198 RKKWSVEEDEELFAAVRRCGEGNWATIIRgdFR-GDRTASQLSQRW 242
                      789***********************9662134.488888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.179193250IPR017930Myb domain
SuperFamilySSF466899.33E-12195248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-11195245IPR009057Homeodomain-like
SMARTSM007175.7E-9197248IPR001005SANT/Myb domain
PfamPF002492.8E-6198242IPR001005SANT/Myb domain
CDDcd116601.12E-13199247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MVKSSIINSQ KRFITEGDIA TLLQRYDTKT ILRMLQEMAY YSELKMDWNE LVKKTTTGIT  60
NAREYQLLWR HLSYREPLLP VEDDAQPLDD DSDLECELEA SPAVNHEASV EAIAHVKLMA  120
ASYVPSESDI LNDTVEAPLT INIPYVRPEG TQEPLESPWS SGGMNITFPV CIQKATSTTE  180
GMNGNGSASS SMAFRRKRKK WSVEEDEELF AAVRRCGEGN WATIIRGDFR GDRTASQLSQ  240
RWALIRKRGD TSTSVRQSGV QRTNEQIAVN HALSLALGNR LPTKKVSVGI STTTSSRGIT  300
ETQANGASSS QGQQQSKPVV QALPGTATSK SRVVRKTTAS SISRLDVMAT ANSVAVAACV  360
GGVSTAASVP KVEPGKTDSP WPSCSLSVPK VEPGTSVTAS SIIKAVGPTN TLPLANGKLK  420
PVAASPSSSK RPLMDPGSEG STMLSASESR IVSNQRVFAA SVSATVLQPE PSAETVTCKP  480
DGGQKEQARG NGASSLATIH PNQITSTSSE ISRGKQATQA QSPNLLPRKI PVVKTAIHGA  540
TNQKLVNKQS DKTVIPSISG VGSQSQAKCE VNNKVGPAIK ASSVCGKPAE VATMAGTGQG  600
V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g013050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490264.10.0PREDICTED: uncharacterized protein LOC104768011
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGXP_010490264.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein